PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015133.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 472aa    MW: 52691.9 Da    PI: 5.6082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015133.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11272318354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +a+ + Er RR+++N ++  Lr+l P++     +K++ a+i+  A+eYI++L
  Do015133.1 272 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 318
                 68899***********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.73E-12271335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8272318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-8275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-10276330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-8278323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTNAEQQN FISLAPFSIE DHSNPDNLTS  60
EPARVIDHIQ HQLWIDMDQD HSGHMIQEVP PVETTNLVPA MYSVQDHILS HQIGEGAHSI  120
TVEQQILDYE AALYRNGAYA AGHDLLNSLR IQRCGLTTEF PSTEHIFGDP AQNTVNHLDM  180
NNDLPGAAIH ESGIMFSDST LPLSYHATQS HMLKDLYHSR PQNYGLFTSD DGMIGVPGVS  240
GNIFQEIDGR QFDSSILGGR RQKGGFGKGK GKANFATERE RREQLNVKYG ALRSLFPNPT  300
KNDRASIVGD AIEYINELNR TVKELKIIVE KRRNSHDRRK MLKLDDEAAD DGESSSMQPG  360
NDDQNNQING AIRSSWVQRR SKECDVDVRI VDDEINIKFT EKKRANSLLC AAKVLEEFHL  420
ELIHVVGGII GDHHIFMFNA KIPKCSSVYA CAVAKKLLEA VEMKNQALNI FD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953537.10.0PREDICTED: transcription factor TIP2-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YY420.0K3YY42_SETIT; Uncharacterized protein
STRINGSi019192m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-51bHLH family protein